Scaffold Ga0068468_1003194

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1003194
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1057
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10031941	F063773	GGCGG	MGQEFVIKSTNLEDKINELLPAQGGYEPGVDLSASTQII
Ga0068468_10031942	F000613	AGGAG	MPLVKKKLSIAAGAVSDQVLSGTTYEYVDPGTRIVVAAAVDTAGTATADTTMDFTVNNAEFAKDASVSTLVTGQPFGWQGTGYVLNDMVTTGQVRNRPVITFKNGTAATRTVDVAIFIGG