Scaffold Ga0068468_1003050

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1003050
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2081
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002374	Metagenome / Metatranscriptome	566	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10030502	F002374	N/A	MNQVLLYASVILASVSFFLCLYACARVGKLLNSVKGLDWDTIATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQSNVTDIKKNIGG*
Ga0068468_10030503	F013311	AGGAGG	LAFLGDFGKFFNLGSSKEVLGKAGEAVGTFIGGPSGGQVGRTIGRTVARATDNLAGDDNISPLSTADQALEQSAVPVSQRGDVPSEIGAMQGTTGMRVQSAGFGAIPSLVQGARALAPKIGQFFTGTGGAVATGLGTGVAVNMLSGTGNGQMRPVLTQSRRNKARVRQLVNFMGIEGAADFLSQASGMNVTGNDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRASSTTLIKN*