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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006305 Open in IMG/M |
| Scaffold ID | Ga0068468_1002578 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4123 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000720 | Metagenome / Metatranscriptome | 923 | Y |
| F003020 | Metagenome / Metatranscriptome | 513 | Y |
| F009812 | Metagenome | 312 | Y |
| F011410 | Metagenome | 291 | Y |
| F047731 | Metagenome | 149 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068468_10025782 | F047731 | AGGAG | VTYNNDSPVEITLGVCDNCSSYVPFVRLVTEDDKRIYQCMTCKAKHTQHINGKVTFNYLDESYVFKRN* |
| Ga0068468_10025783 | F003020 | GGAGG | MPDISKFKSVSVSTDTHQKLQSMAQNRFEVPVSVQKVIEFLLEKELKKKNGRSNGKSRR* |
| Ga0068468_10025786 | F011410 | GAGG | MKDLKIKLEWSTSNLLVWTVLAMGVGLMIVNIVTIYNIYQVIETMWLEIQQVKETNISLYQFIERHQNDFD* |
| Ga0068468_10025787 | F000720 | AGG | MTLIKENNKVRKEIPNRMMSATFALPIDERRVVGILDYVASDTGVTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVIGQMANYLHKNMEDIIMGKQPEKKQRMLSTDPYAMKE* |
| Ga0068468_10025789 | F009812 | N/A | MTDEFELEIDWIPEDTGAPYEAEDDVFPDIPAHTIDKLCKQKYGHTNWARMGMMSPTDLVGNPCEFDYINGVIYFKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |