Basic Information | |
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Taxon OID | 3300006305 Open in IMG/M |
Scaffold ID | Ga0068468_1002199 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3080 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000720 | Metagenome / Metatranscriptome | 923 | Y |
F003020 | Metagenome / Metatranscriptome | 513 | Y |
F011410 | Metagenome | 291 | Y |
F023621 | Metagenome | 209 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068468_10021993 | F000720 | AGGAG | MTLIKENKGVRKKIPDRMMSATFSLPIDGRKVVGILDYVASETGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVVGQMSNYLHKNMEDIILGKQPDKKQRELSTDPYAMKE* |
Ga0068468_10021994 | F011410 | GGAGG | LKDLKIKLEWSTSNLLVWVILTMGVGLMIVNIATMINMYSVIETMWLEIQQVKETNISLYQFIQEHRDDFN* |
Ga0068468_10021995 | F023621 | GGAG | MSLKERRIENIMKAMKRAKDYEMKSIWSRKLRELFKVRGRKAFERLEDQTRMVH* |
Ga0068468_10021997 | F003020 | AGGA | MPNISKFKSVSVSMDTHNKLMSLAQNRFEVPVSVQKVIEFLLEKEIKRKNGRSNGRSRG* |
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