Scaffold Ga0068468_1002199

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1002199
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3080
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F011410	Metagenome	291	Y
F023621	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10021993	F000720	AGGAG	MTLIKENKGVRKKIPDRMMSATFSLPIDGRKVVGILDYVASETGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVVGQMSNYLHKNMEDIILGKQPDKKQRELSTDPYAMKE*
Ga0068468_10021994	F011410	GGAGG	LKDLKIKLEWSTSNLLVWVILTMGVGLMIVNIATMINMYSVIETMWLEIQQVKETNISLYQFIQEHRDDFN*
Ga0068468_10021995	F023621	GGAG	MSLKERRIENIMKAMKRAKDYEMKSIWSRKLRELFKVRGRKAFERLEDQTRMVH*
Ga0068468_10021997	F003020	AGGA	MPNISKFKSVSVSMDTHNKLMSLAQNRFEVPVSVQKVIEFLLEKEIKRKNGRSNGRSRG*