Scaffold Ga0068468_1002086

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1002086
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3512
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067840	Metagenome	125	N
F073669	Metagenome	120	N
F103425	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10020865	F067840	GAGG	MVKKLGKRYRQTKQAIYTAYDIISLIVILLSFDKLLTSKSRSVEPRQVARLIEKLPKIKKILYDSAPWWAFDDMDVKSK*
Ga0068468_10020868	F073669	N/A	MMIEPNMDLLEAMRVEANLCYKRGDDEDGDALVKSIFDQIFPGLVEEAKRNPTFIYELVALANTEKDEMKATHYKSILLYLKDNGVKF*
Ga0068468_10020869	F103425	N/A	MSDKTYKTYNVEAKGTIKLWMDVEASSQEEAEAMADQVKERIYGEPGPWRPLYDGYTLEITSVRPEPDRSCMRPFIPGYDD*