Scaffold Ga0068468_1001030

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1001030
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14227
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (53.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F007756	Metagenome / Metatranscriptome	345	Y
F044551	Metagenome / Metatranscriptome	154	Y
F078836	Metagenome	116	Y
F087331	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_100103013	F044551	N/A	MKPYLIYLFIGLVFLSLIRTSFKIDRSERNQRLQEELCKVDADYCIK*
Ga0068468_100103025	F078836	GAGG	MKTYEIRTSRIIYDFYEVKANSQREAEELALSRKDKVNTLTTVATPDYCKETV*
Ga0068468_100103028	F087331	AGGA	MQQEPKWRYPEENPYGECTYDGKVEVYYNMTSFLDDTEVHQIWEIVGKAMDRENIVTSGNESLSVRVYDEVSYED*
Ga0068468_100103033	F005533	N/A	MEYTHNELQLLTLISNINNQFYYIGQEDDQVAPIDVKKFTEHCVAFIDSLEIEK*
Ga0068468_100103044	F007756	N/A	MNQLKRYYINVKFDKYGTYTFEAKSKDHAIELYKNGNYDFSDYTEDYGEFNEVIEDIEEEVFADTQLSLAI*