Scaffold Ga0068468_1000983

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1000983
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8297
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018738	Metagenome / Metatranscriptome	233	Y
F024331	Metagenome / Metatranscriptome	206	Y
F030784	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_100098312	F030784	AGGAGG	MFNTYIEDKAMIPVLLAFDWMVSHGTWTDCPYETYVSLKKRVIHNGNAVPLV*
Ga0068468_10009836	F018738	N/A	MTPLYRYYCADTDCGKHFCLMASDDIEAAYRAESMAKEWYQTTLKDVYLDKHANPHRRYRPYDKEILSQPVE*
Ga0068468_10009838	F024331	GGCGG	MKQDEFQAAYFPIKPLYMLIKVDVDSGIVFDQEQAEKYAENHCNNLEYALCDWYYPDDQQYPYIAK*