Scaffold Ga0068468_1000780

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1000780
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20235
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (44.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003751	Metagenome / Metatranscriptome	470	Y
F017657	Metagenome	239	Y
F082820	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_100078023	F003751	AGGAGG	MATYKSNAGAILQPGNQINKLSSYNKEGVHGWPGLEFYEQIGFIKVSNKSGTKANFKSFDITIPSPDRRPDDRVRDDRTSLVVPASSTKPAYVYQASLAIAQDIPAGGLPTFPASPVTTDLQGTNGEFLLLGPDNSGAPLGVPANQPSGLAAASSLLDIGASGIAQGTGMTSTDGTVDGIIPFWTVVTTGGITAANAENSMMYKVTADTTFKVYNVDGVTSTTVNGDGVFISDTASDESKAAYILCRVNYIRPSDPVGWNDVQGLVDFASQLGGGDA*
Ga0068468_10007808	F017657	GGAG	MEDNRQEALNKAKKAQQMMLIQAEMEKQMQPTVPEVQAGSISMQPAILPNPKPQGTVIGADIYSAGNVYPGISGSTKLAATWNPMMDPAEG*
Ga0068468_10007809	F082820	N/A	MRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKGYAISEAQKLLADQLKKSIPSVPDVTGDVVPTGPSNPLPIPPKF*