Basic Information | |
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Taxon OID | 3300006305 Open in IMG/M |
Scaffold ID | Ga0068468_1000735 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34251 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (71.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011340 | Metagenome | 292 | Y |
F029471 | Metagenome / Metatranscriptome | 188 | N |
F044552 | Metagenome / Metatranscriptome | 154 | N |
F065859 | Metagenome / Metatranscriptome | 127 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068468_100073534 | F029471 | AGGAGG | MLASEVNSADYSDSRLDAMSDVLDSVDIKEGVKTLFRTMITPFAQEKDWAMIAEWNANSIIGCFERHLEQCNNSLDKTMKLMENALREDVGNEISKLNVDKLIFRRDAQQLNINRAETIVNELHLAYEVAFEKKFIPKSKQAGAVKDVSDEMKQYNIARIKEALGK* |
Ga0068468_100073541 | F065859 | N/A | MSFLNSLSLKDRRRLRTIVKATHLKHYPTHMITDYEADKLVEAFGEETLYKMLKENVGTNVD* |
Ga0068468_100073550 | F044552 | AGG | MAWDNIKEKKPIPAKSIDGYVRTPAEEAQLNKTFAGVFKGSDGKLVLNYIRSITTEAVAGPNIDSNQLFHLEGMRFLAGVIQTRIKKGEQDGR* |
Ga0068468_100073558 | F011340 | GGAGG | MSADPVTLAVISFGVQAVGTYQGIQAQKAANKARIREYETEKKFNSLKALQDSNDVREEALKKQKINRAIQAGSGYNDSSRSFLSVQTEIDRIAKKDIGNIRLNMMRGNQKMDSMIYTTKVMGKAQEFGGYASIAASGFRTASYAKGYQGGNTGRGQYGYDSEATKMGGIRTKTEGSF* |
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