Scaffold Ga0068468_1000672

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1000672
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10845
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002883	Metagenome / Metatranscriptome	523	Y
F006348	Metagenome / Metatranscriptome	375	Y
F010476	Metagenome / Metatranscriptome	303	Y
F029472	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_100067210	F010476	N/A	MFDYKIIAYNKLGKVQETENLYCAPDEIDDVMYTMSEQYGYAEAYDTMDTHCGEYGERPLSLGERKYF*
Ga0068468_100067212	F006348	GGAGG	MTLVSENTPYRNKKYIVEDFEFDTKFKTEKEIEDLNFKRDNAYGVWDARGRNEDERINDLYNKVQDYMGVYLCSLSFCENRPHPLTSYM*
Ga0068468_100067215	F002883	N/A	MSTLTHEDMLLEIFDEVQEAFPYYDEEKQIEIANKRFEDLCQ*
Ga0068468_100067226	F029472	N/A	MLSRKTIENLTDKLMVEVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITSIQQHLRCSPNHSQIHYPRCPIT*