Scaffold Ga0068468_1000605

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1000605
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47138
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (43.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017658	Metagenome	239	Y
F033841	Metagenome / Metatranscriptome	176	N
F034215	Metagenome / Metatranscriptome	175	Y
F036741	Metagenome	169	Y
F070220	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_100060510	F033841	AGG	MEDLKPETIKIVTPNPTNFRYSYLVTPDEYKGVKKYKAECLIKKGIMMKDEMGREVDAVEHIIEQLEGLLDRWKAALKEYYPDRKFTLTKNKFGEPSLPWTTEDDYLVIKTNKKAGGVKQNGDVWTNPPVTFWANEDPLRLMSDEEKKEYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRKHVEWTGSPDFEAAPPSSYEEKSTASTAADF*
Ga0068468_100060519	F034215	GGAGG	MPTKKSSRKRDEDGKFVSEKAIVSELGVNEENPVPEKSGDVITRHGSTIHYS*
Ga0068468_10006053	F017658	N/A	MNFMEEINEETQAMLKQISIRKAEKKAVAKKRIAELKKLIKFWEEDL*
Ga0068468_100060542	F036741	N/A	MNHKEFFKILVGNPPPEIEFEIEVKQRETEQLPDEAIRAYCLDLVKYTKLQDLLLTSAIMRISEIETKLYRYEKGMELYKKVRKLGFVGKIKYLLFGKTDKK*
Ga0068468_10006055	F070220	AGG	MKCTKCESLDIKVRETIYRKAEQTKGFRNKSITPYVYRRRVCLSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLTPN*
Ga0068468_100060557	F017658	N/A	MGVITMNFMEEINEETQKMLKQISIRKAEKTSVAKKRIAELKELIKFWEESL*
Ga0068468_100060558	F070220	GGAGG	MKCTKCESLDIKVLETKHRKAEQTIGFRNKSITPYVYRRRVCLSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLTPN*
Ga0068468_100060562	F033841	AGG	MEDLKPETIKIVTPNPTNFRYSYLVTPDEYKGVKKYKAECLIKKGTMMKDEMGREVDAVEHIIEQLEGLLDRWKAALKEYYPDRKFTLTKNKFGEPSLPWTTEDDYLVIKTNKKAGGVKMNGDVWTNPPVTFWANEDPLRLMTDEEKKEYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRKHVEWTGSPDFEAAPPSSYEEKSTASTAADF*