Scaffold Ga0068504_1151282

Overview

Basic Information

• Taxon OID: 3300006304
• Scaffold ID: Ga0068504_1151282
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2122
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F013815	Metagenome / Metatranscriptome	268	Y
F072442	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068504_11512822	F013815	GGAG	MYFVQYEKTLPPWYFGTDKIQAETSEDAVKEFYKHHDSFEDRIRSVREVQDTYQK*
Ga0068504_11512823	F072442	AGGAG	MKNTQEFFQLGVTKPSKSDVQNYLNGLGTRLMQLSDIKKKIITHFKNIKNLKLDSFGRKVLSFEEYIPEEITKRDIKKNK*
Ga0068504_11512824	F001930	GGA	MKSFKGYLKEDPPAWQRSASEKIFEFQKIQYMQIPLTSSTMEWIFQVQLPRATVFHVTSGIGLDKLKKLQNRKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIISSKSDIMSQPDKTGRRWVALYNIDPKYKLEKEMTKMLIDLAVKHDPRNKEYLKTSPEIGIGVWWKLQTDLQTNFAKDKAGKKLSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTARRTGDWVKTDIIPILGKIPHKHWKSTKELSTYISQVADAEVRTLRRSKE*