NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099556_100005

Scaffold Ga0099556_100005


Overview

Basic Information
Taxon OID3300006291 Open in IMG/M
Scaffold IDGa0099556_100005 Open in IMG/M
Source Dataset NameHuman buccal mucosa microbial communities from NIH, USA - visit 2, subject 604812005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28253
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (92.11%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F051214Metagenome144N
F067847Metagenome125N
F071329Metagenome122N
F074985Metagenome119N
F081456Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0099556_10000517F081456AGGAGMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLIMTAIGFLLCAMTVILYTISAE*
Ga0099556_10000521F067847AGGAMFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDFYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL*
Ga0099556_10000528F018385GGAGMAEYENQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDSKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVKCLT*
Ga0099556_10000529F071329AGGAMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDETVKAVNEARDHIEIED*
Ga0099556_10000530F051214AGGAGMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0099556_10000534F027205AGGAVASRLVVSADDILKAVKESEAFERKALTEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRVKRNTK*
Ga0099556_10000535F036281AGGAMITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESQQYHVKSFMRVPGSTDLWITAEIDTGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLEHVEWAADTIRYF*
Ga0099556_10000536F074985AGGAGGMELTDGGWYKTPRIIKGEDFLAHIHDTYVSGNATYVEFKASEGEIRILEYRKLYDVDTENAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDSKFWHVMGLKLDVDADGSSFWGLYLKRQDSDFMKEIRMSLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDDEKNKRYYYNRPAIKLRIQTDPETGEQKYLLDHIKAMHID*

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