Scaffold Ga0099523_1000010

Overview

Basic Information

• Taxon OID: 3300006262
• Scaffold ID: Ga0099523_1000010
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 246515023
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129533
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (95.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099523_10000101	F081455	AGGAG	METTNIQEINMKAAEKLGELFDYVFCGKKPNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLENKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKYLVIRLSTVVNGTTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0099523_1000010116	F099452	AGG	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLNDLRKTPWYKDWFIDDKRNSDLIDLSKFNFRSLERFEKESYLKDVEHYDFKKVIEVDSYSLYDALAEENGVDLFKLAAENILINHGFFNNTDYNLYDIPDKYMEDIEVSLYMCLLNSGNMDFMDNKTFKSTELFYIVKNNICGTIFFTLFDRMNEDTRTRAR*
Ga0099523_10000102	F080166	N/A	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNNIIKRINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLR*
Ga0099523_100001023	F092229	AGGAG	MTNEKYRFKHIPEVVLKNIRFIKDNNIDVGNGKDMLECMMNVNSVVRTKIYEDYEFAKDVAERRFGSTIEDLDMVTILQKCTTRPYNSILNNIYFRYFNSKLIDDLFKLAESPKILDLAIEYKCDYYAVNTAKTAVRRYIDDIYYNKFAIDSTIITSSRSLNDPQVNAVKSAEFTYELLMASRAEEFTPEIVRNIFIKYGLKPNPSRNVYNRINNNLNLFYYIEDYLEEYREEGKFIYGTKEYKISKDLRRLPLMLILTQLTRKNNSGYILNSNLELVKG*
Ga0099523_100001046	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSYMVDLSPHINNLLVNISDLKNLGKITQLEPSIENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*
Ga0099523_10000105	F099453	AGGAGG	MNRFDVIELAQQTLTFVYNTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0099523_100001051	F095629	AGGAG	MRELIICLCLLGCFSVANANNVEQPKEVKIVHNDDSVALHKKIYQLEKRIERLEELLKKEDK*
Ga0099523_100001068	F092232	GGAGG	MNTQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHVKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPAEVAFDADLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*