Scaffold Ga0099521_100718

Overview

Basic Information

• Taxon OID: 3300006261
• Scaffold ID: Ga0099521_100718
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764588959
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11806
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099521_10071813	F074985	AGGAGG	MELTDGGWYKTPRIVKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRGSDFMTRLNFNRDQKFLYNLISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0099521_10071814	F036281	AGG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCNDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKAYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0099521_10071815	F027205	N/A	VASRLIVSADDILKAVKESEEFERQALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRGAK*