Scaffold Ga0099374_1002016

Overview

Basic Information

• Taxon OID: 3300006247
• Scaffold ID: Ga0099374_1002016
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159005010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11990
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099374_100201610	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYKDKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRAFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0099374_100201612	F018385	GGAG	MAENVNQWESYKELSIENDRDPVLDDPVIYGVNVKHFTLTVYSPDGRVKKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFIPRTNSRLPSTLWNTKEVK*
Ga0099374_10020164	F074985	AGGAGG	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0099374_10020165	F036281	AGGAG	VITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRLSDDQKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0099374_10020166	F027205	AGGA	VASRLIVSADDILKAVKESEEFEKKALTEARKRDRVEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK*