Scaffold Ga0097621_100438751

Overview

Basic Information

• Taxon OID: 3300006237
• Scaffold ID: Ga0097621_100438751
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1175
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: South Gull Lake, Michigan
• Coordinates
  • Lat. (^o): 42.405765
  • Long. (^o): -85.399014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005150	Metagenome	410	Y
F013425	Metagenome	271	Y
F048377	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097621_1004387512	F048377	N/A	VSRRQNDEWVMYEEIPEIEETQKVERAAKRLVTEVQVCLA*
Ga0097621_1004387513	F005150	N/A	MQDLMKTAKYRKRCFDQIEGITASNRELAAEVERLRRQLEAADQERTEQEAQNQNLVGQLNDKERQKTSKLSFCHIKCMTRVVALLVMTAVMQA*
Ga0097621_1004387514	F013425	AGAAG	MKERDGWKAQCLEATEDRDTWKNRYQEVATGILPILDLVDPALTEEEPRTPQLGLVERCRQAWGWFQEFMKEAGEYTGAHVLSMVRAHY