NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0097621_100396831

Scaffold Ga0097621_100396831


Overview

Basic Information
Taxon OID3300006237 Open in IMG/M
Scaffold IDGa0097621_100396831 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1234
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: South Gull Lake, Michigan
CoordinatesLat. (o)42.405765Long. (o)-85.399014Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007174Metagenome356Y
F045823Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0097621_1003968311F007174N/AFNGIARFHQNKCCFVDYDKGFFRKISRGPFLPIQVL*
Ga0097621_1003968313F045823N/AMLSSLTSYEQLLPYPAHFGTRVDPDIFDEIVRFHRNKRYFVDYDNGFFRKITRGPLLPIQVLQGEACNS

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