Scaffold Ga0097621_100308156

Overview

Basic Information

• Taxon OID: 3300006237
• Scaffold ID: Ga0097621_100308156
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1400
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: South Gull Lake, Michigan
• Coordinates
  • Lat. (^o): 42.405765
  • Long. (^o): -85.399014

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F006575	Metagenome / Metatranscriptome	370	Y
F029856	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0097621_1003081561	F029856	N/A	LADKGPDAGIHVVAWTDGYATAERALRRAGIGFFGLRAVLRVLSPAESDALLGVAAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLLAFAKEGFRSTP*
Ga0097621_1003081562	F006575	GGAG	MTEAASPYLALRQAVRPAILACRLLAGDQERAGKLATECEDLLFLSAELLKAAGRARLLGPGPGQAPLGPNDDGGERQAQLVDAYADAGLLWAKVVGSCLALAGALIERGDWDDVRALASFLASSGEETAAAELRLVLGNAIWQRHSEQLRVISNTMPPAAIGGAISALRAVLREVPEEYPDRNREVNRFLPPLAAAVGALMREQQVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCRRPGRDTT*
Ga0097621_1003081563	F001698	AGGAG	MSGVVNDIEALAEFRSHLMRFNHDLAENFSTIQSHWRELGEVWRDDMYRLFGEALEEVLPGITAYLEATEGQEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGTG