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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006237 Open in IMG/M |
| Scaffold ID | Ga0097621_100096856 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2476 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: South Gull Lake, Michigan | |||||||
| Coordinates | Lat. (o) | 42.405765 | Long. (o) | -85.399014 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000823 | Metagenome / Metatranscriptome | 875 | Y |
| F000825 | Metagenome / Metatranscriptome | 874 | Y |
| F062871 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0097621_1000968561 | F062871 | N/A | AAAPAQAAWKAFKYPQYGFGVDFPATPKTGKGEYRGVIAGRMPTTTISAEEDGTIYQVEIVDFKNRLAETPVLLEEAIFLATQEGNLVSDVTARTDNGAKFAKYGRRVTVLTKDGGKKISELYLVNGLLLKFEGIITPKGDIENPEAARFQDSILYNLDRDWNIPPPLPANREDGPRLLAPERPGQ* |
| Ga0097621_1000968563 | F000823 | GGAGG | MRAWTLAAVTGAAVIALTAPASAAWRGYISHPLGFAFAAPGELKMEKGKYQAAVAGAHDTMVFRSVDDNIEYKLIIVDTTAQANQAAVLLGEAQYIFQDGKKVLMDAFGRVDGKYGRKLTIDLPNNGGRTTGAFWFVNGRIVSLQATVLPANGDYDSPEMARFVDSITFYPVRAADDAIELPLPK* |
| Ga0097621_1000968564 | F000825 | GGAGG | MRKICLLAPALILAFTAAPAEAAWKSYVSHKLGFSFEAPGDVKTQAGTYRGQVSGPRETIVFRSLDDNIEYKVTVMSFMQAQADGASILGEREYVFQDGKKVLMDTFGRVEPGKEAIYGRKITVEQPKDGGRTTAAFYFTKGKLITLEATVLPANGDYATPDAGRFIDSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |