Scaffold Ga0099364_10025468

Overview

Basic Information

• Taxon OID: 3300006226
• Scaffold ID: Ga0099364_10025468
• Source Dataset Name: Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7311
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Pointe-Noire, Republic of the Congo
• Coordinates
  • Lat. (^o): -4.7
  • Long. (^o): 11.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000184	Metagenome	1706	Y
F002459	Metagenome	557	Y
F034614	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099364_100254683	F002459	N/A	MNFHNGTNIIEKHYTIFLGEEILEFFMVPMVKTHLNVLEQKISAI*
Ga0099364_100254687	F000184	N/A	VREDGRLVGGKGCRERLYNREKWKKLLTRARNHRNLHMPME*
Ga0099364_100254688	F034614	N/A	MLQKFFRNKNISKKLKLRLMNTLIDKTLTYASETWILTKRDRKQINIFERKVYRRILGPIYDNGKQNWRILTNKEIYAMVKKPI*