Basic Information | |
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Taxon OID | 3300006224 Open in IMG/M |
Scaffold ID | Ga0079037_101008844 Open in IMG/M |
Source Dataset Name | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 824 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie, Old Woman Creek | |||||||
Coordinates | Lat. (o) | 41.384 | Long. (o) | -82.513 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035819 | Metagenome | 171 | Y |
F069035 | Metagenome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079037_1010088442 | F035819 | GGA | MTSRNHARPAPKPERKPALAPRPPEGGNGSQERRLCLIGLKVDAGLRREIDTYAEAHGVSRSRAAGHFLAIARDAIREREGVPGSRADELLEAVDGLRAAVDILGPPTFGMLRLLAHWATQGGGVKVNEDELLAELRSVGADEWEQAVAETERDLQETPGGKVQKERH* |
Ga0079037_1010088443 | F069035 | AGGAG | VFFVEARYHHSPKRAADQVRYIAHREEGLRDGQRRDLYGIGPRYRAFRGDERAIRRALVEDARGLRNPVYFRFILTV |
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