Scaffold Ga0075422

Basic Information
Taxon OID	3300006196 Open in IMG/M
Scaffold ID	Ga0075422_10001460 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006196 Open in IMG/M

Scaffold ID

Ga0075422_10001460 Open in IMG/M

Source Dataset Name

Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6797
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

6797

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Tennessee

Coordinates

Lat. (^o)

35.8444

Long. (^o)

-83.9599

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F041481	Metagenome	160	N
F077482	Metagenome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0075422_100014603	F077482	N/A	MPKWMNWLPHQWHASTLVLPIVILAYPSLRCGEAYELLLDRELSALDQFYAGWGTVIRMDENSEGQGPKDTMQDNEYRPAGGIKKFAEPTIQLRGTAEKIGLDRQSLSSFIGTKFLNEFAFLQSDFVFEKTYQTWEIGIFECETWTVGVNYPIAFHVQCAGGSMDEPREWHYASLGYGPAGKTSETVRGTLDAIIQEYATFVRKASGKD*
Ga0075422_100014604	F041481	GGA	MMMCGPFRHVSASEREQCLDPVPPAISSQDLSYCLKVQRQTLMRCRVSFLVVFSITLLSLAMPAFPATAPSTYSGYTGTDPKPIPSPPPVLGPMNSILTDPTFGSRILRVTDSKTAGGASLISEDAGYFRTWNADSTAIKLMTTTGKSWWVEFDPVNFKVGDGSSRPTLHQLNFNYKWEWSAVDPDVLYFLNGNQLSKYSKSAEVVTHLGGPPSGEPVTYHVAVVGQDSWVCSAAGAGAQGTYTKLFCLNPNSPSQSKFIDIANRTINGISQVDSNWPTGQKIGIHSIFGSAGGTWLGVIFHGQSWGKGVAVLNLATNSWSLATGVLHQSGHPCLGHGRYVNGSGSTNGKDSRGAILRDPDHLMDSSRQKFLMQPELTIGWHDAEHSSWFNASTNPDAPILFSRYNITKPPSPLPWYGEIIMAATDGSNTVWRFAHNHNGGGSFYGQSFAQISNDGRWALFSSYWDGTLGASANSDSGMSTRLDTFIVELVPAERSLNERVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075422_10001460

Overview

Ecosystem & Geography

Associated Families

Sequences