Scaffold Ga0075445_10097679

Overview

Basic Information

• Taxon OID: 3300006193
• Scaffold ID: Ga0075445_10097679
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1099
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019027	Metagenome	232	Y
F029154	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075445_100976791	F029154	AGGA	MELQKIHGLITNITQHYSAFAVDAEGQNIFITNNLARFLQLTVGDQVMMDVVPNHPDKAHTIPYRAVVCVKIKEYGPTVSISQDKPEPDNGVLEQLLKEWTELKQSPQEIMGTINLLLKDADTYLITSEVVAAYREDQPDQTDVSDKDINNACHRLFKQAKIARAEVWAKPDQSKCSYNLWAFDASR
Ga0075445_100976794	F019027	N/A	EFTKWTDHAKTVDQDALIYIIQDCRNARQAMKGWNPVKENYYADQGMTYSDELRRRMK*