Basic Information | |
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Taxon OID | 3300006193 Open in IMG/M |
Scaffold ID | Ga0075445_10026601 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2436 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004606 | Metagenome / Metatranscriptome | 431 | Y |
F008190 | Metagenome / Metatranscriptome | 337 | Y |
F018962 | Metagenome / Metatranscriptome | 232 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075445_100266014 | F018962 | N/A | MIKIILESARNGVIKKVVDDNYGGGKEHFTSTDVFESSDTDRNKFNYIKRFFFDLCDDLGLEIGSKFDKDVLDINTKWGSHYEPTAKDVEFKIKRLKSELKELEEWKNI* |
Ga0075445_100266015 | F008190 | AGGA | MEEHIEFNFIYSSDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQEYVETLSNKPITYKIYHSPDITVNGTAELFDDIIEFE* |
Ga0075445_100266016 | F004606 | N/A | MKTHRIFNKGQTVYCLLASHTNPNILLPVKGVILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHVFENRARKMILKSEDFKTTRALEDRLNDKDRERFFVVIESVMCTKTKVNLLGLFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSVKEFDSRYKIAWADKFKRSNLDIDKYLNSLG* |
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