Scaffold Ga0075445_10011778

Overview

Basic Information

• Taxon OID: 3300006193
• Scaffold ID: Ga0075445_10011778
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3888
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F019909	Metagenome / Metatranscriptome	227	Y
F020259	Metagenome	225	N
F024582	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075445_1001177811	F019909	N/A	MTNFEQHIGQELPQAIIAHLNNSSIEMLTKQAEKLKFDSWCPVSMEGDSPELRKQLKESSDLLFQWIGFQSVTK*
Ga0075445_100117786	F024582	N/A	MKSTHNTLTSLLSAWDKLEVIGTNPDKHKSILTETNIHEVSRRIAIEYRHELNNGGGYPYIVCYLVMFDENGHRRGVTNNGSWGCHGEEILEFKKWFQLKTREAATLEEERIDITQDSIADFLA*
Ga0075445_100117788	F009699	N/A	MQKVDSSAPFWKELHDENRPTLNVEGTPTPRCLYNLMLTRRDVNLYAKIDMKPHRGWKIGDVKAYFGLKGGKQKIADAINAIHDELIGRLENQNDDTNEND*
Ga0075445_100117789	F020259	N/A	MKMTEQTFTAVADWAERIQTMTQENSLINAQDIVHDVFGMLRDDEHFLPRL*