Scaffold Ga0075447_10043183

Overview

Basic Information

• Taxon OID: 3300006191
• Scaffold ID: Ga0075447_10043183
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1688
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037431	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075447_100431832	F037431	GGAG	MPRYKTDRPFSEQELINMDVIHDTNPSLFTDQDEESYVEKDFINDSERNTLSAFFKDNFNRIGYNINGHVLHITFPMLIPAISDILRPKVLQHFGSDVVFYSDVSDDPMSVGDQYFKSVKPYGLHTDAVTHINGYRPYKDIIIPIDLDKVEETHYVTFNQRYRGRATHFMRGRKIGSFANYANVIRHQSYEEYGVENIGHNEKDMLILEKIMPKHIPMSIYEGLSIEKILKWRPKDALIHDSSVLHAPTDFREQGAKFKTGITLHLMKADPTYNNRLEGHYTPFSRYTKPLIKT*