Scaffold Ga0075447_10000238

Overview

Basic Information

• Taxon OID: 3300006191
• Scaffold ID: Ga0075447_10000238
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27715
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (51.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F033111	Metagenome / Metatranscriptome	178	N
F034245	Metagenome / Metatranscriptome	175	N
F089156	Metagenome	109	Y
F095743	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075447_1000023810	F089156	N/A	MLLIQFNTSIDISIFPVEIIQTFKHDTYLIDLNLTDYSTINYITSNYDILSMQSNADMPYIDVYEAHTTSYTNVTTEDTLAPLIEKLDLLSMAEPHIVCFSWTTDRNYILDYRVKKLLEAGFLVVCGGGNADLPITDVSPVAVDGVIRVGGNKYNGQYQNWIDIYDVTVPDVPNTHEAAHIVCELMINKNLELDYSLGFYSESTIRSAPWPLRLAQTPSTAIKYYEFMPVSNLRYFSGEHLLPVREGDTVSVLYGGVPLEDFTSPRNIQLDTTVPRGCTFNTQSGWLYGTFKFKVPMFHRFLADINGQLFEYHIISADADTKPDFAECKQKYLNQPYDAPPFTMREYWVPMARPIKLLEPGDPFIRTFNLNDLHLYRSYE*
Ga0075447_1000023811	F034245	AGGAG	MRGVTFSEFGGGQNVEMFLHAPTQLPGTPMQEAVKTAITIREKYTKDLYVWCDYSVQHIYSQIAMQAFTMADIPFVAAIPVLSNNLSKRENDCTIAYCEQRNIPYKLFHIDVPAFFDSEEFELHGETFPTTQPQMTIVGKFFSMLPDCCVVYPGFMMHISNSDWTRTKNNGFMPFVPHVTQEHAAEHHGLEYTNFQEHYVDMYTSWMFTQSYGEVLKSATQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTNKLIGIEKLKSHFGHDKYDKELRQRLVPFSPLTLKYASLQYTVKVDTKLKEMLQTYHETNFEFFNKLF*
Ga0075447_1000023814	F022909	GGA	MDDKPNKEILRTFFDGKIGCIEYSEKWRPQLEEFCRVAKDLGYVNNESPEAMKVDEIQYHCMIHIPTNRIYAVAGVQYMPEYREGYYRIWTRLSRIPMEDIPMTRMTRYGRGEMPEFDGLLYFNCDWAWKQSNCKATFGTTLANKAYADNYVRSANTITDYVAKNWWRRKGIATPEGMTEFYGVPQVVWNMHFDKFKELS*
Ga0075447_1000023822	F033111	AGGA	MRNELPYYFEVPEMPKIPFDVSQYYIPDEDRLVAQEDKKNLDDIQGVKSRSQSANWYQSYMNVEENSRGQNKRDFKEVNLYEEVDFELTKLMKEFLGDTLHLRFNSILMLRTPANCNSRWHCEGPVFHTRQCALNFPVFGNADVMEGQWATFPRFKDIPARENEKMGFVTKTDMENTEILCKWDKPTMPAFYNTMIFHRGMNEHSNIDRVVLSCAVEDFSDINVVHRKYSTGKLFK*
Ga0075447_1000023843	F095743	GGA	MDSYWEWNKENFDWHYDPSSKQKDVTYVGRFVHENLEAVVQSTVDLLTDEDYYNEVSIKGEPYNEEAREIMEGYHNDLTRAGFNEHNTGGRQTRQNLNTLFQIMAQASGLWNPQIMFLEQPPGKFVPWHRDAYNNYR