Scaffold Ga0075446_10124859

Overview

Basic Information

• Taxon OID: 3300006190
• Scaffold ID: Ga0075446_10124859
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 743
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F019158	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075446_101248591	F004771	AGGGGG	MSRIKTGDLVRMKTHETGLVGIVVDLHPRQSKPMGRQIAIKWFKGSGKTDWEPESWLE
Ga0075446_101248592	F019158	N/A	MTIVIDSEDREGIDAALKIARLMHAKYVSNGISHKESFGKIEYIKMLRKFMKESIEHLNDEESNQVKDVGDMGNLRNAKRFADRMFRGER*