Scaffold Ga0075446_10071803

Overview

Basic Information

• Taxon OID: 3300006190
• Scaffold ID: Ga0075446_10071803
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1042
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040345	Metagenome	162	Y
F094103	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075446_100718033	F040345	N/A	MNKITEHDDIVTYILIGIGIGVGIGFVLKVFVDTYIIIESLPI*
Ga0075446_100718035	F094103	N/A	NWIWKKRLKIKEIGWAEYNNIDRKIEDSIRGSRKIEAIKLYRQNKIDIGVDCSLKEAKEYVDKVQLLMGLG*