NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0097681_1139423

Scaffold Ga0097681_1139423


Overview

Basic Information
Taxon OID3300006189 Open in IMG/M
Scaffold IDGa0097681_1139423 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan - 1398105538144 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066919Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0097681_11394231F066919N/AKIRQAQKAFEECKGLVVFKERMANSIPKAEIVIDIDSIKALQGTAKWRQVEEPVVWCVFSLLTDSTIPILLNTISSGFNNALSDAMSKEVAAEEMHKIVITFAQDQETIYAESKVALSKNDKTWTVTVTRNWNSVTDIGYGVDPDKLKAQIVNSL*

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