Scaffold Ga0079042_1001560

Overview

Basic Information

• Taxon OID: 3300006181
• Scaffold ID: Ga0079042_1001560
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B nyco_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4265
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F011233	Metagenome / Metatranscriptome	293	N
F045200	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079042_10015602	F011233	AGG	VSFSSEYTILNGQFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPTSTPTGVPPRFVAEEVVSTRLPVKVS*
Ga0079042_10015604	F045200	GAGG	MSQGYITEEIGKVTLNQPEVVTLLSPIRDAQYLKSLQNPTSTAPDAGLGVIDNPFFFVAGHYPGGLSPTGAPEDRTYLVWFGSPKGTTNEKPQFSVFYAKVHPERYVPNAPAETWLDPPVLLVSYDQISSDVVNWADNVFTSAGYTPSSPGVINVPNNAGYIPNYGYVDYPNSPSPVTLNFTGTPELKQLHMVYDMLDDTVLMYFSITVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTIEQTIVNAFRGFTWGNAIQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPLYMTAMSGINYNYPHGDSLIAIAFADIHKNPAQPQTYYQPIMTSYGMAFPAFQGLPPNLESCPSSYGSNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGAYAIPIALPPRPDWGGISSIRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYLDGVAIYLDKSAISPKGKTLVTVPPLIFGQTSPGGSYYVIAGANGPNSIYHGVVTHTFGKKYARVYLNINAGNNVFVNIYTRYRSRSAPDLQQMYGNSPNPNNTANYYPVVERSFGTLVYATDYSYNMPYALEYSRTSKFRVDGQVLWVLTNDGNGPVWVELEGD*
Ga0079042_10015605	F011097	GAGG	MIRDVPLYTSGGTDPFSGLPVGGSPITGNGNNSQVLSFHPNYARLHIYITGLSGTSPSIQFTTGSPYGANFYTLPTITSPQYVYVIGNENKTIITYLNTSNAVLQQVELPYNIFFNGCYVSWSVGGTSPSISAYIHFEFEDEEEGGE*
Ga0079042_10015606	F008949	AGGAGG	VSSQTVTLGTQTITPKVEDLGNSYYIEFQVKITKYLNNSTNQTIDVKFTCNKYKQVAVPRTDPLSPPVFQTVQKTIQECVDEWYAQHKSVYEVA*