Scaffold Ga0079042_1001481

Overview

Basic Information

• Taxon OID: 3300006181
• Scaffold ID: Ga0079042_1001481
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B nyco_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4399
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7219
  • Long. (^o): -110.7021

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079042_10014812	F011233	N/A	VKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLSGDGLPFYQSIKIEIIPRNQPALITGFAANIIEIYDVNLFKESVKEFFETITPSFTLPVVPSVPPRFVAEEVVSTRLPVRVT*
Ga0079042_10014813	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANATLNVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSPVTVASGSLQQPGVQTVQADFYSTSAERYISLALTYSTAPTTGFVRAHINLFYEGF*