Scaffold Ga0079045_1007281

Overview

Basic Information

• Taxon OID: 3300006180
• Scaffold ID: Ga0079045_1007281
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 930
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042426	Metagenome / Metatranscriptome	158	N
F061049	Metagenome / Metatranscriptome	132	Y
F063847	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079045_10072812	F063847	AGGGGG	MRFKKYVFCYDQYSYLQDRMITHHVSIYAKSLKEAESKLEKLGYKDIYLKKKKRKVSY*
Ga0079045_10072813	F061049	N/A	MSIFVIKFEKDNSVIKEWVLKGNEDLEKSFIEMLDIDFQFVNKIRGLEK*
Ga0079045_10072814	F042426	N/A	KRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMVYATTVLGEWLTENFEKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIADKPKAPVQVQEEGF*