Scaffold Ga0079045_1003842

Overview

Basic Information

• Taxon OID: 3300006180
• Scaffold ID: Ga0079045_1003842
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1412
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040183	Metagenome / Metatranscriptome	162	N
F069055	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079045_10038421	F069055	N/A	VMPQGNTTSACYACLYNATTDRDVRVGSYNLVIDAMQIRICYFHPAANVLAFGSDPISFASGVGTIGHCRPQFTTYPDGVPKIIYNDFAFDQSLKTVMEYIDPQVLRPENHKKIYITEDAFPNPLFFSTFGRKKLFARLYFAAGGSLVPPTNNPQNDPQYAPVFQIAEYDGNYDYSTGAHYLDNWDVGTLVLGTQEPTTSLSGSIPPSQFSLKQVEFSAEDPPAYIGILMKAQSTNAIGPFGVIVLE*
Ga0079045_10038422	F040183	N/A	VKLKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRFIIANGVATVWINGASTALGNVNVPYIWQVRFAITGTSPSFSIVGTYEARE*