Scaffold Ga0079045_1000862

Overview

Basic Information

• Taxon OID: 3300006180
• Scaffold ID: Ga0079045_1000862
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3840
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F084462	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079045_10008622	F033508	AGG	LAAEAAAAPFVSPTTLRRVTGSSTTQLTIPARIGYRHVLYDVFVTGPTAYAYADVSVGTRVFLRIPFQAANCVTVNFPGAKVNGKGFLWGLSDLFGAEHLPNAAEDEDINITVSSPAVRIDAYYAEIKPEDVSSHSVNGGSDAKIKPFIELLDTLVATTGNGINVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYTSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVAPGDLYMNWPYRQYFKPDQPYVFKPNHQVSLKADVAAVTGLGSTLRVALIGIRERLG*
Ga0079045_10008623	F047176	GAGG	VSAMATRIFRFYITLNAGQANNGAQGNPSPFTVTAPSGINRRIVEIRPWGTQPFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHEYSVVMTNNGTATGTFGVDLVVEESALTGGGAAAPAAGGA*
Ga0079045_10008626	F084462	GAGG	MSVAKDKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPQTNLTAQQIADYVKKDYAKRKGIVGMQVEV*