Scaffold Ga0079045_1000347

Overview

Basic Information

• Taxon OID: 3300006180
• Scaffold ID: Ga0079045_1000347
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6989
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053392	Metagenome / Metatranscriptome	141	N
F066921	Metagenome	126	N
F094112	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079045_100034711	F094112	AGG	MSNVAVYKHGYNFITIARLVSSKVSLNFGLTTFNYPILAIFVYISNTSSPASGYIKTTITPLDEVTIGYGYSPTISYFIDPHKGAMYIPLAAYEYINITITPSAGANLVYDAFLYDWMGEN*
Ga0079045_10003474	F066921	GGA	MGEENPQVSPKAAYNRAVRAEEKAENALNEIASLKSSIDELVRTLKGAPSQIQAQSLRPGQMIHTIISEDDEGITEEIVCPTCGTRELRKIPAKIEVKEKPVVPENYIPAPHSVSEAISLLESLHLPDGRTIFESDKFWSKLNEYAQKYVQNQKKR*
Ga0079045_10003478	F053392	GAGG	MMSVPSYVTLTGPQTTVMPSSFVIAASAVAGSVIQGSILAFGPQSPAVAAPQVPITEVWSIVDIYIIGSVTPDALLSIYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPSSTWFTTITLLGANGSSQQTYTVYFSVIRAPYLPSASSK*