Scaffold Ga0079045_1000194

Overview

Basic Information

• Taxon OID: 3300006180
• Scaffold ID: Ga0079045_1000194
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9560
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024140	Metagenome / Metatranscriptome	207	Y
F067920	Metagenome / Metatranscriptome	125	N
F101504	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079045_100019410	F067920	N/A	MPADLIFGISDQGLFGAISSVLEYILSFLKTLIEQASVYAIDFLKELWSNPTQTITFLTLLGVVLV*
Ga0079045_100019414	F024140	N/A	MNWKPTSLSHIISIIGIMIALLGINAITFYYMHNLNNTQFLFMSLVNITGLIGMAYYMVSFSANEKGVTIQSKPETTT*
Ga0079045_10001944	F101504	GAG	MATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVGNTSFEANIMDKSYRYYNMRIPDNKPFQHIKIKELQHIKDKFENMKVDIDKQKVEAMANNFMTFNSVVRRYKIVNNFVKLTAILNNHKTATSEDYRFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYYGNIFHYSKLKTYLNVSTKTIYNYAKANNIKIDNGYIIYDNERVLRVLRNVI*