Scaffold Ga0075367_10033800

Overview

Basic Information

• Taxon OID: 3300006178
• Scaffold ID: Ga0075367_10033800
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2950
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002918	Metagenome / Metatranscriptome	521	Y
F003146	Metagenome / Metatranscriptome	505	Y
F041469	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075367_100338004	F003146	N/A	MPPRRASKKDGPAKLAKRMKRRWRVVLLRNKGEILGQVEAPDVASAKAVAAIQFDLDEFQRTRIMVQELG*
Ga0075367_100338005	F002918	AGGGGG	MTRKLPPAGLGSGIDKGRPDDTVVSGEWEIGRIYRARGGPDTVR*
Ga0075367_100338006	F041469	GGAG	MPEMTAGELRAIASELNSYVKLHPGEHEARSLAIRCGEIAALLSAPSAPRVTEPGVEGIEDRVLRIVSGAPLTRREVRVAGIFALMWFAMDGFWFISTLNHWFGL*