Scaffold Ga0075367_10006621

Overview

Basic Information

• Taxon OID: 3300006178
• Scaffold ID: Ga0075367_10006621
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5870
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053522	Metagenome / Metatranscriptome	141	N
F062199	Metagenome / Metatranscriptome	131	N
F079173	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075367_100066212	F062199	GGAG	MPALTPDNVLLWLHGRRVGLVGDGSFSASSGLMVDGQLVGARRGPVVSGLATGSNGAGSIAFPAAVDGDAVLLALDLTTPANVTASFEAVISTAGQIRQVSAANLSAKNILFQIAPAS*
Ga0075367_100066213	F079173	GGAG	MHRYREFGLVSDEDEIMRRAFRDGFRRAGLSFAQFLDALAWYRDHARPDAEEGPADEAQLSDAFAQFAAGKGWTAAQRDGALDLYRAIRDDGPAAVTQSPPPGEDRATLARADDLLRTDPARYWGDAELQDAVFEARERLDRPAAEAGAAEPPDLQHPDRQRVAEIEALLRDPSGDGQRRYWNDAGLRTDYAQALSRLHGGDGSADGESAAVAPESIGAAS*
Ga0075367_100066214	F053522	AGGA	MTQASHTAKRSPRKAPLVLSLPPAVADTPEPAPQNEAAVPAARPVAPIPQSAMQDAAFARNWWRVVIDTDRTPYASVLTDVTVWGPNEARLRAGDLVEVLDEQSTLFALIYLVEHVPAISIRFAELIKAPLGGVAVGRTEARGNHHAQWRGPSKRWCVVGPTGTVVRDGILTRDEAERDVTTRNTPASMAFVSHPRM*