Scaffold Ga0070765_100033288

Overview

Basic Information

• Taxon OID: 3300006176
• Scaffold ID: Ga0070765_100033288
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4041
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006480	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070765_1000332883	F000739	GAGG	MSHLNIWLKGVFAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINGIIGVAAYLQKSPLPTD*
Ga0070765_1000332885	F000512	N/A	MIRLLRETHETPENVARRLERAGGINRFGQPNYRAVWGWNRLAWIGGKFEDHDPSTGSLLREVIELRQEPKYPAVNRWHIERWVPPEVYGSPRTWYAQTIERENGVSIPALGPYPSRGEYEHCFTLEGPGGEFVQLTPTAAEHIARAIEFSRHVPRSRKRSSIDDRERREDRAYDEWAFDKLDDAVPAFHQRPFVTIL*
Ga0070765_1000332886	F006480	GAG	MRRAVVGGVGLLLCGVIAAREKADPLVFVFVRVDREKDVAVLRPMIAPDIGVQLDSGPRNLEQGKVLNCASSVRIHSAIVEAQLAQVTDLLLDCGEQKFVVKTLDFTPKRK*