Scaffold Ga0070765_100001603

Overview

Basic Information

• Taxon OID: 3300006176
• Scaffold ID: Ga0070765_100001603
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13957
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007593	Metagenome / Metatranscriptome	348	Y
F008269	Metagenome / Metatranscriptome	336	Y
F018247	Metagenome / Metatranscriptome	236	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070765_1000016031	F007593	N/A	MRIGTNPGGWWTVKRLSAHGTILAVCLWSLYAWNLATPGLRDRNGNLKGTDFLHFYTLGLLADAHRGADLYDVDAQAALAAQHVPEAAGLRYLPLYPPQ
Ga0070765_10000160310	F087522	GAGG	MKQPLSILATASLSLCLFAGVAMRLSAQSHSAPAPHKILLRADLQPGEVLRYELEAGASFLPITDASGANLFPPRGPCDYSLAAIVTLRPQPPDKDGNTPVEAGYSGIRVTSVRCAMVSAADFQKRAAALQSSSVTFRVGPHGETALMHTPDGYFKYWDGGDLLRKVTQDLLQTEFAPQPVSAGASWKPRGQFAYSRDRALKDLELSGADLRFRNLVHVDGKSCAWVTSQYVFSPIDLPAAATANGGRVIPGAGNNAVAAVLHISLLLDPAAHHVAWLHRSQTIDNKLTLASPYDDDPSGDDPAEDEGERGTQYDPRDWENPVPDRSSMRSGNPGRYPLMTFHFQEEARARLLPDEGSVEWLAALKRFEATPDPESGTVPIPATKTFLPGPAIQASKPAIVKRATRISVDSDSLVSTPAGFTRYEKGLCRDVWFCATVSVGLPGEVQVSEDTPLRTVYLAKQGDLLVSVAIGPALDRHSNGLTEDEELKKQADYYLANYVWLAAKPGIMTNFAGATFDGYPSLIAEFSATQRDLANIHGVLGLMLTPWGKVVPVSCSTDQTAPEWQALCERVITSVSLRR*
Ga0070765_10000160312	F018247	N/A	ENKTPKTATPAPALDKTVVAVGSPTTPLADLARQARQAPHAKPQATLDNSEANSSAPAGFQSFTVAYCINPQQCSQATVVIPEKVEVVSKINAQYIFKTALNGDPVFLYAGPADVNAPYRSMTSPDYIRMRDLANSNGWSREKAGDVSTQEVTIQGRPALITRFRYEREAKKFWIGERVLIENVGHQFLLGCTAPDGSFADAEALCTTLVNSWRPE*
Ga0070765_1000016038	F008269	GAG	MVNRLRAQATERSQRPRKPWRPALNAVLGGAISLALVLSLGFPVHAADLPNVTFSLDFPGSDPDRYSISVTSDSRAHYECSGKISADSEDRETYETDFDFTDATRARVFSLAARANYFSGKIDSGNKKLAFTGAKKLTFKDGEHSSSAEYNYSTLPPIQELTDLFQNVAATLEFGRRLSHYHRYQKLALDEELKRMEDEVRRGSLIELQAVKPILQEIYDDPSVINMVRARAQQIMAQGATGKGAK*