Scaffold Ga0070765_100000409

Overview

Basic Information

• Taxon OID: 3300006176
• Scaffold ID: Ga0070765_100000409
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25837
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000532	Metagenome / Metatranscriptome	1046	Y
F001800	Metagenome / Metatranscriptome	632	Y
F001893	Metagenome / Metatranscriptome	621	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070765_10000040915	F000532	AGG	VAFIKKRFDIEPVITSGKTGQFEVIADGERIAERGGNWFTRRFGAGYPDLDSVVEQIEKRCKE*
Ga0070765_10000040923	F001800	AGGAG	MKTICKMLRAGLGIVLMGAFLTAIGGAHAGGWRGDDDQLVQVAELEQQIHVTFHAAVSVHDPVNGDSPEVITQRIRDALSIWTKDAELTVVSTTAAAGNYIGNGDPDDPESCPLPSGDTSASGQQGTLCTFFKYVSGGLQPTNKFVSLSPAYKTKYVPVRGDDGRWKSSVYFECHYFDVSLNPGTGQPFWTAKSHVDLDGEAKKIDGRWLLTHVSSSAVPVPVP*
Ga0070765_1000004094	F001893	GGCGG	MGTFKALVGFLAIILVVVALFQVLPPIMANFSFTDDLRQVAMMAGANPQKTDDDVRNDVLRKAKEHDLPINEKQVTVQRILTPGLMAVYVAADYTVPVNLPGYSFELHFNPSSENK*