Scaffold Ga0070765_100000063

Overview

Basic Information

• Taxon OID: 3300006176
• Scaffold ID: Ga0070765_100000063
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71394
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (67.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005311	Metagenome / Metatranscriptome	405	Y
F005887	Metagenome / Metatranscriptome	387	Y
F006072	Metagenome / Metatranscriptome	382	Y
F008092	Metagenome / Metatranscriptome	339	Y
F010777	Metagenome / Metatranscriptome	299	Y
F018412	Metagenome / Metatranscriptome	235	Y
F024875	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070765_10000006327	F024875	N/A	MANQTDLRFEALKSALLDSWVALSEDESKIVAVGASYEEAVRNSESVGVSDPVMVKTPKVWMPISV*
Ga0070765_10000006332	F008092	AGGAG	MSTTPSTTIITNLKSATLSTANTLKSAGAEGIDMPGMLALALSKAAELKVCLTLIVRSTDSADPNLTTLNDILASLT*
Ga0070765_10000006333	F005887	GGA	MGVSDRELVLKAIDIEFQREVLDKLVRLETKMDALVGNGQPGRMKMAEDKVAVLERNDLRNSVHNRLVNGAISVAISVAVALHKYWLR*
Ga0070765_10000006337	F005311	AGGAGG	MGSGICGSALVRAANAMLTALGGDDVSLLLPATATASDAAGQLGLVDPGVQEVIITPVVAHSLPTGNLGPRRRIEFTLPASALELQLPTLGMGTAEELFNAVLGLVYDGDLFHIEAVVTENFAGTAYFYVVTAVE*
Ga0070765_1000000634	F006072	GGAGG	VLKTAAVVVAFLSLMLLPTISRAQLLPSGNVYVGVSYGDTVDVVNRYTVRGWNASVEEIPLPRFSYLGVVLDGSGFYRKGLQQYNALLGPRVSKNFGKWRVFAQVMGGAQRTTSGGMTHYPVVEDGGVGVDHKFHLLFMKNFSWRAQFDYDRSRLLTATQNDFRGSTGLVWRF*
Ga0070765_10000006350	F018412	AGGAG	MSSAINPEAAQPSTIQGDEQSNRNPPVTEWGGTDADGGQVPAPASSESHVTLAPAGPAATAGLQNYDTGDSADGVEDEAEREG*
Ga0070765_10000006364	F010777	N/A	MMSFSLAACSRQNAPAPPDAASLLQAIAAADPAKYPSLQESRHWSNPYLVIRSDKIGLLTGVTANEEQILKPEEVLKALAGLPASAWPYGRAVAILVDEKPAASELDKIAIRRSRGIVAGDLEGAHVAIQWIPTS*