Scaffold Ga0070765

Basic Information
Taxon OID	3300006176 Open in IMG/M
Scaffold ID	Ga0070765_100000045 Open in IMG/M
Source Dataset Name	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0070765_100000045 Open in IMG/M

Source Dataset Name

Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	90108
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	60 (68.97%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

90108

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

60 (68.97%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New Hampshire, Hubbard Brook experimental Forest

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014166	Metagenome / Metatranscriptome	265	Y
F016697	Metagenome	245	Y
F035862	Metagenome / Metatranscriptome	171	Y
F046507	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070765_10000004512	F035862	AGGAG	MANKSKHTGLGIALGAALGAVAGVLAGHIAIWLGIGIVIGMALGASFRRSEKECPECAAMHQKHEVRKQLES*
Ga0070765_10000004527	F046507	AGGAG	MEAARLVGIFAAIFVALFASFFFVFISALDLSGERTKAARDKRLAEHRMNARLLKLDI*
Ga0070765_10000004564	F014166	GAG	MNHRLFPAKKTFPAGAAILLPLTLLLAPTNAQTPHKIDTSNEVRDSVSASVQQEMVRTETGFFEAWKTKDQAYFREHIPENGVFWSDSGTFSREQQLAEQQTSAKTCTVEGYGLSDFGALPLASGAYLLTYKAERYAICNGEKVPVHINGSSIYIFKAGRWQAIYRAQVPLKNLS*
Ga0070765_10000004580	F016697	GGAG	MKCVKLRLSCQVAAVALLCLLWLGRPAQGAAQSSGGTRVAIGAGSTIVHSKFGGQIFGFDIDQNGTEGVLSEDKLLDNGDVLAAVETFDQASGKILKVVAETETQDNFLTLGIAGASVGLVEHEHVQGLFVVKRIYEELNPLDSNKITGAWTPPLASDDIILGLSRNQGSPTTAVLAFENSGSGPTFVFGSNVKANSFEPAITLSDPVFGIGTGPLVGYDSATNQAVVAASTGAAGGPPPVFALVDLTTGTVNEFNGLPGPFPVREGFVNGLAVDSEDGIACTTTELDFRVEFYDLKTETGISVTLPGATNQIESGSDVEFDPVHKLFFVAQEVSTTGPGSSIQVYNTKGELVESLNGFNFSNTSNVVFTHIALNPRNRSGYVDGPDSGVTEIQSFTY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070765_100000045

Overview

Ecosystem & Geography

Associated Families

Sequences