Scaffold Ga0075014_100052547

Overview

Basic Information

• Taxon OID: 3300006174
• Scaffold ID: Ga0075014_100052547
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1755
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1752
  • Long. (^o): -78.4168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003243	Metagenome / Metatranscriptome	498	Y
F005515	Metagenome / Metatranscriptome	398	Y
F020965	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075014_1000525471	F005515	N/A	VNVLPSLHRSKVQRALPSPGKGQSTQLSLLMRTRHLNGLLTVALLLISTVPLYAQRQQQNVAKLKADARNLVGIIGSDKTKTQTYCQIYDLSEQLLQTVQGKDIKKAKALAEKIAELDKKMGPEFAALIDIEKQVDLDSRDGQEIASIVA
Ga0075014_1000525472	F020965	GAGG	MKTPLVMVLVAVVLVTVGTLAVMNKACKNSQQHPWCAPMSSLRHHIKTGHS*
Ga0075014_1000525473	F003243	GGA	MLFSLLGYFFCMITVLTTVVVLLPAFSNISTFGNGRHYPRPVIARTVAVETQRHSPVAKEASPAKDVSPVVATAKADAKKIKHYKPKVLARQQNNYGYGNALGYAEESGYGPRGLFFR*