Scaffold Ga0070716_100064784

Overview

Basic Information

• Taxon OID: 3300006173
• Scaffold ID: Ga0070716_100064784
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008656	Metagenome / Metatranscriptome	330	Y
F046589	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070716_1000647841	F046589	N/A	TSWSAPYGISASSYAQACERLKSGYAAPYGPIFY*
Ga0070716_1000647843	F008656	GGA	MPQPDIPTHFIRRFALIGLAMLVAWPVRAQPAPPGQAPPNAVSVEQSAIFDVTPVTGTLKETVRKRQELVWRARRNPNERRFQLTDMSVAFLRNEAPGEVKITFTGRVSAFGWRPDGEPKINVTARTRGGASIYSWTFDISVRCADNNRPLPSLGQTVPNDIAANLFNSVGAVEISEYREPNSPILTARQCPS*