Scaffold Ga0070716_100000187

Overview

Basic Information

• Taxon OID: 3300006173
• Scaffold ID: Ga0070716_100000187
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24361
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000417	Metagenome / Metatranscriptome	1165	Y
F008204	Metagenome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070716_10000018717	F008204	GAGG	MTLYGIVRMILFGFLVAGVAAQTPWTSPPSPERGVEDSSGSSQAKPQVEVKRFSLLSRTSIDVSPDWIEREQMPLPPSPRLARFAPQVTFLEFMALENPKMHSALRIATTTNPFTGGDEVTLDVQMHGAAGSGNGLADYLFYFFFSPPRDCLDGGSEAYRKAKSQAELPDQKTVSPDLSIRTDCKHAPSLADFYSRELSSGVLFQATNGVERASGIYPEFYLTPMEKVEANGLTFYVFEAQGRMQLDLATVNHFNLPDEMQGAQADFFWAVGAPSPFPFLRDPQRKNVPLIQVAYAGIGLGPDKRDIFMGLLRQVRLL*
Ga0070716_1000001877	F000417	GGA	MIRQLCISVCLALVPTAIPLRAANRPHAGADNQKLKVWTNEDLEKLHALGLISIVGKVDEETSVPQYAPGDYGTTRDPRWYAEQAARLRGELERRQARLDEYRQAIEDARSLKTTAAGINLEEGDLGITPEAGIEILQQRVKEAQAELDDVEDLARRNDIEPGALRGQ*