Scaffold Ga0070716_100000100

Overview

Basic Information

• Taxon OID: 3300006173
• Scaffold ID: Ga0070716_100000100
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33752
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F003831	Metagenome / Metatranscriptome	466	Y
F009982	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070716_10000010026	F000043	GAG	MYQLGWATLPGLRGLSVSGFRATPTDAPDNESGVAVEFTDSIQCDEFLRQLEKHFATRRFTNSADAFDTVKAYVLEHATRS*
Ga0070716_10000010027	F003831	GGA	VSVDSKTGAGSIRSAIRWGLVLAAVATFGFRLPRLMREIQAWRGAVQLGDTSGAEGLRTFVAADSIGLLIVLAFGVVIYFVLRPRSTSQP*
Ga0070716_10000010033	F009982	N/A	SEVWIALYNTLLHFDKEGNRRATYKIYTPQGARLEANTILVEQERLIIGSDPLGIYEFERPDKKTLK*