Scaffold Ga0070716_100000036

Overview

Basic Information

• Taxon OID: 3300006173
• Scaffold ID: Ga0070716_100000036
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56048
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (75.51%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000678	Metagenome / Metatranscriptome	940	Y
F018062	Metagenome / Metatranscriptome	237	Y
F018063	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070716_10000003612	F018063	AGAAGG	VQTNLKDNDRKWLWGFLAVIVMSQLYFVQELLAVFALFALGFAVIASVVASLYVLQHCWELAVVRLADIRRPVMNVAPVSREDQKAA*
Ga0070716_10000003632	F000678	GGA	MDKFEEFGKRIDEEFARLKSIKNFEDFGRRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKFREAAAWIEARNAARSAQPPKDSQS*
Ga0070716_10000003636	F018062	AGG	MKPKKKAKSKRPKMPKWFPVDDEMKELAAMLEKEVSDWPGVSKRPMFGYQGLYRDGAIFAALPRSRAMKSPRSLMFKFASMSPALLDSAKKDSRIDTISRVPGPGWFLFEMDEASAMQSALGWLGRAYEAAKK*